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1

Interaction databases on the same page

Turinsky, Andrei L, Razick, Sabry, Turner, Brian, Donaldson, Ian M, Wodak, Shoshana J

Journal:

Nature Biotechnology

Year:

2011

Language:

english

File:

PDF, 239 KB

english, 2011

2

Blind predictions of protein interfaces by docking calculations in CAPRI

Marc F. Lensink, Shoshana J. Wodak

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 2.21 MB

english, 2010

3

Viral Phylodynamics

Volz, Erik M., Koelle, Katia, Bedford, Trevor, Wodak, Shoshana

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 388 KB

english, 2013

4

Deviations from Standard Atomic Volumes as a Quality Measure for Protein Crystal Structures

Joan Pontius, Jean Richelle, Shoshana J. Wodak

Journal:

Journal of Molecular Biology

Year:

1996

Language:

english

File:

PDF, 548 KB

english, 1996

5

Multi-state Modeling of Biomolecules

Stefan, Melanie I., Bartol, Thomas M., Sejnowski, Terrence J., Kennedy, Mary B., Wodak, Shoshana

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 878 KB

english, 2014

6

Docking, scoring, and affinity prediction in CAPRI

Lensink, Marc F., Wodak, Shoshana J.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2013

Language:

english

File:

PDF, 436 KB

english, 2013

7

Free Energy of Cavity Formation in Liquid Water and Hexane

Prévost, Martine, Oliveira, Isabel T., Kocher, Jean-Pierre, Wodak, Shoshana J.

Journal:

Journal of Physical Chemistry

Year:

1996

Language:

english

File:

PDF, 330 KB

english, 1996

8

Recurrent αβ loop structures in TIM barrel motifs show a distinct pattern of conserved structural features

Jean-Pierre Y. Scheerlinck, Dr. Ignace Lasters, Dr. Michel Claessens, Marc De Maeyer, Dr. Frederic Pio, Dr. Philippe Delhaise, Shoshana J. Wodak

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1992

Language:

english

File:

PDF, 1.53 MB

english, 1992

9

Identification of predictive sequence motifs limited by protein structure data base size

Rooman, Marianne J., Wodak, Shoshana J.

Journal:

Year:

1988

File:

PDF, 750 KB

1988

10

Modeling of the three-dimensional structure of proteins with the typical leucine-rich repeats

Andrey V Kajava, Gilbert Vassart, Shoshana J Wodak

Journal:

Year:

1995

Language:

english

File:

PDF, 1.47 MB

english, 1995

11

Computer analysis of protein-protein interaction

Shoshana J. Wodak, Joël Janin

Journal:

Journal of Molecular Biology

Year:

1978

Language:

english

File:

PDF, 2.52 MB

english, 1978

12

The structure of cytidilyl(2′,5′)adenosine when bound to pancreatic ribonuclease S

Shoshana Y. Wodak, Mamie Y. Liu, H.W. Wyckoff

Journal:

Journal of Molecular Biology

Year:

1977

Language:

english

File:

PDF, 1.43 MB

english, 1977

13

Protein–protein interaction networks: the puzzling riches

Wodak, Shoshana J, Vlasblom, James, Turinsky, Andrei L, Pu, Shuye

Journal:

Current Opinion in Structural Biology

Year:

2013

Language:

english

File:

PDF, 827 KB

english, 2013

14

Systems Analysis of Chromatin-Related Protein Complexes in Cancer ||

Emili, Andrew, Greenblatt, Jack, Wodak, Shoshana

Year:

2014

Language:

english

File:

PDF, 8.11 MB

english, 2014

15

174 Self-association prompts proteins for new function: The role of altered dynamic properties

Wodak, Shoshana J., Garton, Michael, Malevanets, Anatoly, McKinnon, Stephen

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2013

Language:

english

File:

PDF, 67 KB

english, 2013

16

Modeling protein‐protein, protein‐peptide and protein‐oligosaccharide complexes: CAPRI 7 th edition

Lensink, Marc F., Nadzirin, Nurul, Velankar, Sameer, Wodak, Shoshana J.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2019

Language:

english

File:

PDF, 5.72 MB

english, 2019

17

Modeling protein‐protein, protein‐peptide and protein‐oligosaccharide complexes: CAPRI 7 th edition

Lensink, Marc F., Nadzirin, Nurul, Velankar, Sameer, Wodak, Shoshana J.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2019

File:

PDF, 5.72 MB

2019

18

Detection of cavities in a set of interpenetrating spheres

Philippe Alard, Shoshana J. Wodak

Journal:

Journal of Computational Chemistry

Year:

1991

Language:

english

File:

PDF, 545 KB

english, 1991

19

Modularity of the Transcriptional Response of Protein Complexes in Yeast

Nicolas Simonis, Didier Gonze, Chris Orsi, Jacques van Helden, Shoshana J. Wodak

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 2.40 MB

english, 2006

20

[Advances in Protein Chemistry] Protein Modules and Protein-Protein Interaction Volume 61 || Structural basis of macromolecular recognition

Wodak, Shoshana J

Year:

2002

Language:

english

File:

PDF, 10.12 MB

english, 2002

21

An Electrostatic Switch Displaces Phosphatidylinositol Phosphate Kinases from the Membrane during Phagocytosis

Gregory D. Fairn, Koji Ogata, Roberto J. Botelho, Philip D. Stahl, Richard A. Anderson, Pietro De Camilli, Tobias Meyer, Shoshana Wodak and Sergio Grinstein

Journal:

The Journal of Cell Biology

Year:

2009

Language:

english

File:

PDF, 3.30 MB

english, 2009

22

Influence of ligand binding on the conformation of Torpedo californica acetylcholinesterase

Nathalie Boutonnet, Daniel Van Belle, Shoshana J. Wodak

Journal:

Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta)

Year:

2001

Language:

english

File:

PDF, 696 KB

english, 2001

23

Systems Analysis of Chromatin-Related Protein Complexes in Cancer || Targeting Chromatin Modifying Enzymes in Anticancer Drug Discovery

Emili, Andrew, Greenblatt, Jack, Wodak, Shoshana

Year:

2014

Language:

english

File:

PDF, 1.21 MB

english, 2014

24

Structural Features of Protein−Nucleic Acid Recognition Sites †

Nadassy, Katalin, Wodak, Shoshana J., Janin, Joël

Journal:

Year:

1999

Language:

english

File:

PDF, 327 KB

english, 1999

25

Energy calculations and analysis of HIV-1 protease-inhibitor crystal structures

Gustchina, Alia, Sansom, Clare, Prevost, Martine, Richelle, Jean, Wodak, Shoshana Y., Wlodawer, Alexander, Weber, Irene T.

Journal:

Protein Engineering Design and Selection

Year:

1994

Language:

english

File:

PDF, 2.14 MB

english, 1994

26

Extracting information on folding from the amino acid sequence: Accurate predictions for protein regions with preferred conformation in the absence of tertiary interactions

Rooman, Marianne J., Kocher, Jean Pierre A., Wodak, Shoshana J.

Journal:

Year:

1992

Language:

english

File:

PDF, 2.24 MB

english, 1992

27

Analysis of Genetic Interaction Maps Reveals Functional Pleiotropy

Pu, Shuye, Ronen, Karen, Vlasblom, James, Greenblatt, Jack, Wodak, Shoshana

Journal:

Bioentrepreneur

Year:

2008

File:

PDF, 90 KB

2008

28

Docking and scoring protein interactions: CAPRI 2009

Marc F. Lensink, Shoshana J. Wodak

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 384 KB

english, 2010

29

Shift in nucleotide conformational equilibrium contributes to increased rate of catalysis of GpAp versus GpA in barnase

Jesús Giraldo, Leonardo De Maria, Shoshana J. Wodak

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 1.47 MB

english, 2004

30

Next-generation protein engineering targets influenza

Wodak, Shoshana J

Journal:

Nature Biotechnology

Year:

2012

Language:

english

File:

PDF, 1.38 MB

english, 2012

31

The Third CAPRI Assessment Meeting Toronto, Canada, April 20–21, 2007

Joël Janin, Shoshana Wodak

Journal:

Year:

2007

Language:

english

File:

PDF, 301 KB

english, 2007

32

Relating destabilizing regions to known functional sites in proteins

Benoît H Dessailly, Marc F Lensink, Shoshana J Wodak

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 1.40 MB

english, 2007

33

Factors Influencing the Ability of Knowledge-based Potentials to Identify Native Sequence-Structure Matches

Jean-Pierre A. Kocher, Marianne J. Rooman, Shoshana J. Wodak

Journal:

Journal of Molecular Biology

Year:

1994

File:

PDF, 1.01 MB

1994

34

CRYBA4, a Novel Human Cataract Gene, Is Also Involved in Microphthalmia

Gail Billingsley, Sathiyavedu T. Santhiya, Andrew D. Paterson, Koji Ogata, Shoshana Wodak, S. Mohsen Hosseini, Shyam Manohar Manisastry, Perumalsamy Vijayalakshmi, Pudhiya Mundyat Gopinath, Jochen Gra

Journal:

The American Journal of Human Genetics

Year:

2006

Language:

english

File:

PDF, 507 KB

english, 2006

35

Computational Protein Design Is a Challenge for Implicit Solvation Models

Jaramillo, Alfonso, Wodak, Shoshana J.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 582 KB

english, 2005

36

Location of structural domains in proteins

Wodak, Shoshana J., Janin, Joel

Journal:

Year:

1981

Language:

english

File:

PDF, 1009 KB

english, 1981

37

Cover Image, Volume 85, Issue 3

Lensink, Marc F., Velankar, Sameer, Wodak, Shoshana J.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2017

File:

PDF, 1.84 MB

2017

38

Assessment of blind predictions of protein–protein interactions: Current status of docking methods

Raúl Méndez, Raphaël Leplae, Leonardo De Maria, Shoshana J. Wodak

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 689 KB

english, 2003

39

Properties of the protein matrix revealed by the free energy of cavity formation

Jean-Pierre Kocher, Martine Prévost, Shoshana J Wodak, Byungkook Lee

Journal:

Year:

1996

Language:

english

File:

PDF, 971 KB

english, 1996

40

Integrative bioinformatics: making sense of the networks

Shoshana J. Wodak, Jeffrey Castura, Chris Orsi

Journal:

Drug Discovery Today: Technologies

Year:

2004

Language:

english

File:

PDF, 449 KB

english, 2004

41

Risk estimates for complex disorders: comparing personal genome testing and family history

Aiyar, Lila, Shuman, Cheryl, Hayeems, Robin, Dupuis, Annie, Pu, Shuye, Wodak, Shoshana, Chitayat, David, Velsher, Lea, Davies, Jill

Journal:

Genetics in Medicine

Year:

2014

Language:

english

File:

PDF, 429 KB

english, 2014

42

Computational approaches to investigating allostery

Schueler-Furman, Ora, Wodak, Shoshana J

Journal:

Current Opinion in Structural Biology

Year:

2016

Language:

english

File:

PDF, 1.40 MB

english, 2016

43

Cover Image, Volume 88, Issue 8

Lensink, Marc F., Nadzirin, Nurul, Velankar, Sameer, Wodak, Shoshana J.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2020

File:

PDF, 4.01 MB

2020

44

Modeling the three-dimensional structure of H+-ATPase of Neurospora crassa : Proposal for a proton pathway from the analysis of internal cavities

Olivier Radresa, Koji Ogata, Shoshana Wodak, Jean-Marie Ruysschaert, Erik Goormaghtigh

Journal:

Year:

2002

Language:

english

File:

PDF, 532 KB

english, 2002

45

Solution structure of the main α-amylase inhibitor from amaranth seeds

José C. Martins, Mohammed Enassar, Rudolph Willem, Jean-Michel Wieruzeski, Guy Lippens, Shoshana J. Wodak

Journal:

Year:

2001

Language:

english

File:

PDF, 2.61 MB

english, 2001

46

Protein structure prediction by threading methods: Evaluation of current techniques

Christian M.-R. Lemer, Marianne J. Rooman, Shoshana J. Wodak

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1995

Language:

english

File:

PDF, 2.10 MB

english, 1995

47

Activators of Cylindrical Proteases as Antimicrobials: Identification and Development of Small Molecule Activators of ClpP Protease

Elisa Leung, Alessandro Datti, Michele Cossette, Jordan Goodreid, Shannon E. McCaw, Michelle Mah, Alina Nakhamchik, Koji Ogata, Majida El Bakkouri, Yi-Qiang Cheng, Shoshana J. Wodak, Bryan T. Eger, Em

Journal:

Chemistry & Biology

Year:

2011

Language:

english

File:

PDF, 1.19 MB

english, 2011

48

Markov clustering versus affinity propagation for the partitioning of protein interaction graphs

James Vlasblom, Shoshana J Wodak

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 759 KB

english, 2009

49

Homo- and heteronuclear two-dimensional NMR studies of the globular domain of histone H1: Sequential assignment and secondary structure

Cerf, Corinne, Lippens, Guy, Muyldermans, Serge, Segers, Alain, Ramakrishnan, V., Wodak, Shoshana J., Hallenga, Klaas, Wyns, Lode

Journal:

Year:

1993

Language:

english

File:

PDF, 685 KB

english, 1993

50

Assessment of methylation level prediction accuracy in methyl-DNA immunoprecipitation and sodium bisulfite based microarray platforms

Rajendram, Rageen, Ferreira, Jose Carlos, Grafodatskaya, Daria, Choufani, Sanaa, Chiang, Theodore, Pu, Shuye, Butcher, Darci T., Wodak, Shoshana J., Weksberg, Rosanna

Journal:

Year:

2011

Language:

english

File:

PDF, 1.75 MB

english, 2011

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